PHD predictions

PHD predictions for predict_h27267

Different levels of data:

PHD brief
PHD normal

PHDsec summary overall your protein can be classified as:

mixed

'all-alpha': %H > 45% AND %E < 5%
'all-beta': %H < 5% AND %E > 45%
'alpha-beta': %H > 30% AND %E > 20%
'mixed': all others

Predicted secondary structure composition for your protein:

%H: 42.8

%E: 14.2

%L: 42.9

Residue composition for your protein:

%A: 8.8	%C: 2.6	%D: 3.0	%E: 4.0	%F: 4.2
%G: 6.6	%H: 3.0	%I: 2.0	%K: 3.5	%L: 13.0
%M: 1.1	%N: 1.9	%P: 7.7	%Q: 4.2	%R: 11.0
%S: 6.6	%T: 5.1	%V: 7.8	%W: 1.6	%Y: 2.5

AA :	amino acid sequence
PHD_sec:	PHD predicted secondary structure: H=helix, E=extended (sheet), blank=other (loop) PHD = PHD: Profile network prediction HeiDelberg
Rel_sec:	reliability index for PHDsec prediction (0=low to 9=high) Note: for the brief presentation strong predictions marked by '*'
SUB_sec:	subset of the PHDsec prediction, for all residues with an expected average accuracy > 82% (tables in header) NOTE: for this subset the following symbols are used: L: is loop (for which above ' ' is used) .: means that no prediction is made for this residue, as the reliability is: Rel < 5

pH_sec:	'probability' for assigning helix (1=high, 0=low)
pE_sec:	'probability' for assigning strand (1=high, 0=low)
pL_sec:	'probability' for assigning neither helix, nor strand (1=high, 0=low)
P_3_acc:	PHD predicted relative solvent accessibility (acc) in 3 states: b = 0-9%, i = 9-36%, e = 36-100%.
Rel_acc:	reliability index for PHDacc prediction (0=low to 9=high) Note: for the brief presentation strong predictions marked by '*'
SUB_acc:	subset of the PHDacc prediction, for all residues with an expected average correlation > 0.69 (tables in header) NOTE: for this subset the following symbols are used: I: is intermediate (for which above ' ' is used) .: means that no prediction is made for this residue, as the reliability is: Rel < 4

PHD_acc:	PHD predicted relative solvent accessibility (acc) in 10 states: a value of n (=0-9) corresponds to a relative acc. of between nn % and (n+1)(n+1) % (e.g. for n=5: 16-25%).

PHD results (brief)

PHD results (normal)

....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12...,....13...,....14...,....15...,....16...,....17...,....18...,....19...,....20...,....21...,....22...,....23...,....24...,....25...,....26...,....27...,....28...,....29...,....30...,....31...,....32...,....33...,....34...,....35...,....36...,....37...,....38...,....39...,....40...,....41...,....42...,....43...,....44...,....45...,....46...,....47...,....48...,....49...,....50...,....51...,....52...,....53...,....54...,....55...,....56...,....57...,....58...,....59...,....60...,....61...,....62...,....63...,....64...,....65...,....66...,....67...,....68...,....69...,....70...,....71...,....72...,....73...,....74...,....75...,....76...,....77...,....78...,....79...,....80...,....81...,....82...,....83...,....84...,....85...,....86...,....87...,....88...,....89...,....90...,....91...,....92...,....93...,....94...,....95...,....96...,....97...,....98...,....99...,....100..,....101..,....102..,....103..,....104..,....105..,....106..,....107..,....108..,....109..,....110..,....111..,....112..,....113..,....114 AA MPRAPRCRAVRSLLRSHYREVLPLATFVRRLGPQGWRLVQRGDPAAFRALVAQCLVCVPWDARPPPAAPSFRQVSCLKELVARVLQRLCERGAKNVLAFGFALLDGARGGPPEAFTTSVRSYLPNTVTDALRGSGAWGLLLRRVGDDVLVHLLARCALFVLVAPSCAYQVCGPPLYQLGAATQARPPPHASGPRRRLGCERAWNHSVREAGVPLGLPAPGARRRGGSASRSLPLPKRPRRGAAPEPERTPVGQGSWAHPGRTRGPSDRGFCVVSPARPAEEATSLEGALSGTRHSHPSVGRQHHAGPPSTSRPPRPWDTPCPPVYAETKHFLYSSGDKEQLRPSFLLSSLRPSLTGARRLVETIFLGSRPWMPGTPRRLPRLPQRYWQMRPLFLELLGNHAQCPYGVLLKTHCPLRAAVTPAAGVCAREKPQGSVAAPEEEDTDPRRLVQLLRQHSSPWQVYGFVRACLRRLVPPGLWGSRHNERRFLRNTKKFISLGKHAKLSLQELTWKMSVRDCAWLRRSPGVGCVPAAEHRLREEILAKFLHWLMSVYVVELLRSFFYVTETTFQKNRLFFYRKSVWSKLQSIGIRQHLKRVQLRELSEAEVRQHREARPALLTSRLRFIPKPDGLRPIVNMDYVVGARTFRREKRAERLTSRVKALFSVLNYERARRPGLLGASVLGLDDIHRAWRTFVLRVRAQDPPPELYFVKVDVTGAYDTIPQDRLTEVIASIIKPQNTYCVRRYAVVQKAAHGHVRKAFKSHVSTLTDLQPYMRQFVAHLQETSPLRDAVVIEQSSSLNEASSGLFDVFLRFMCHHAVRIRGKSYVQCQGIPQGSILSTLLCSLCYGDMENKLFAGIRRDGLLLRLVDDFLLVTPHLTHAKTFLRTLVRGVPEYGCVVNLRKTVVNFPVEDEALGGTAFVQMPAHGLFPWCGLLLDTRTLEVQSDYSSYARTSIRASLTFNRGFKAGRNMRRKLFGVLRLKCHSLFLDLQVNSLQTVCTNIYKILLLQAYRFHACVLQLPFHQQVWKNPTFFLRVISDTASLCYSILKAKNAGMSLGAKGAAGPLPSEAVQWLCHQAFLLKLTRHRVTYVPLLGSLRTAQTQLSRKLPGTTLTALEAAANPALPSDFKTILDPHD_sec HHHHHHHHHHHHHHHHHHHHHHHH EEEE HHHHHHHHHHHEEEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH E EE HHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHEEEE EE EEEEE HHHHHHHH EEEEEE EE HHHHHHHHHHHE HHHHHHHHHHHHHHHHH EEEEE E HHHHHHHHHHH EEEEHHHHHHHHH HHHHHHH HHHHEE HHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE EHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHEE EEEEEE EEE HHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHH EEEEEEEEE HHHHHHHHHHHH EEEEEEEHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHH EEEEEE HHHHHHHHHHHHHEEEE EEEEE EEHHHHHHH HHHHHHHHHHHHH EEEE EEEE HHHHHHHHHHHHH EEEEEEEEE EE E EEEEEE EEEE EEEEE HHHHHHEEEEEEE HHHHHHHH EEEEE EEEE HHHHHHHHHHHHHHHHHHHHHHHEEE EEEEEE HHHHHHHHHHHHH EE HHHHHHHHHHHHHHHHH EEEEE HHHHHHHHHH HHHHHHHHH Rel_sec 9999436489999999999997888999895478715771597999999998523674156899998885422267899999999999986245899989899641389998211212111366613578830113799999826157999999875443352366521159721223520148999988999742554334342011255478979988635488745688899988789999988887886677779988898996178763699466735454112365455688654667899989999999989999775121277875577445673212121555402557887753202266899999988888424664359999996242568651587337854110155445211027888778878669884789999999189853331479999998377873277633699972155322242225737887765324888877506888613526999999999999876532356999954135676315533101122378899987136899999999987699999997652999986555122898983354410213322312688999999999999988867751458711122235523999999999874325789626999985146668795688999999997277733676653147887556999998875422153789999999972134545179999736642322351788999875220245134225422246431113676341021589779974423452443113214244441379999999998166212689731113426311214687467885677764521344312158872573213445502223332454565557885421265643534773222103579999999999999998754311253112113672477874674579999999985043012455789998588899999999999851311587344333598999997278841799988874588887553539 LLLL..L.HHHHHHHHHHHHHHHHHHHHHHH.LLL.EEE.LLLHHHHHHHHHH..EE..LLLLLLLLLLL....HHHHHHHHHHHHHHHHH..HHHHHHHHHHH...LLLLL..........LLL..HHHH.....HHHHHHH.L.HHHHHHHHHHH....E..LLL...LLL.....L....LLLLLLLLLLL..LL...........LL.LLLLLLLLL.L.LLL.LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL.EEEE.LLL.HHH.H.H.....LL.LLLLLLL.LLLLLLLLLLLLLLLLLLLLLLLL....EEEEELLL..LLL.......LLL...HHHHHHHH.....LLLLLLLLLLLLLL...HH..HHHHHHHH...LLLLL.EEE..LLL.....LL..L.....LLLLLLLLLLLLLLL.HHHHHHHHH.LLLL.....HHHHHHHH.LLLL..LLL..HHHHH..HH........HH.HHHHHHH...HHHHHHH.LLLLL..L.HHHHHHHHHHHHHHHHH...HHHHHHH...EEEE..LL.........HHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH...LLLLL..E.............HHHHHHHHHHHHHHHHHHHHHHH..LLL.......LL..HHHHHHHHHHH...LLLLL.EEEEEEE..LLLLLLLHHHHHHHHHHHH.LLL..EEEEE...HHHHHHHHHHHHHHHH....L.HHHHHHHHHHH....L.L.EEEEEE.LL......L.HHHHHHHHH.....E.....E.....L......HHH......HHHHHHHH.....L.................HHHHHHHHHHH.LL...EEEE.......L......LLL.EEEEELLLLL.L.........EEEE.LL......HH.........L.LLLHHHHHH....EEE..L..EE.......HHHHHHHHHHHHHHHHHHHH.....L.......LL..EEEE.LL.HHHHHHHHHHHH.......LLLLLLLLHHHHHHHHHHHHHHHHH....EEE......HHHHHHHHH.LLL..HHHHHHHH.LLLLLLLL.L.L P_3_acc eeebeebebb bbb e b ebbebbbbb b eebbebbeeeeebbbebbbbbbbbbbbbeeeeeeebeebeebbbbeebbbebbeebbeeebeebbbbbbbbbeebeeeeeebbeebb b beeeb ebbeeeebbbbbbeebbeebbbbbbbebbbbbbbbbebbbebbbeeb ebbbb eeeeeeeeeeeeeebebe bbe bbeebbbebbbebeebeeeeeebb bbe eeeeeeeeeeeeee eeeebbbb eeeeeeeeeebbbbbbee eeeebeebebbbeee eb eebb e eeeeeeeeeeeeeeeee eb bebeebb eeeeeeeb eebbbbeb eebeebeebbebbbbbb e bee eeebeebeee beb ebbbebbee bebbbbbbbeb bebebbbebbbbbbbeeeeeeebbbeeeeeeeeeebbebbee eeebeb bbb bbbeebbeeeb bb eee bbeebeebbbbbeebebbbeebbbebbb ebbbbee eebbbbbbbeeebeeebbbebbbbbbbbbbbebbebbb bbee beee bbbb eebbbeb bbbbeebbeebebeebbebebee eeb eebbebebebbeeeeeb bbbbbbbbbbb beeeeebeebeeebebbbbbbbbeebe eebbbbbbbbbeebbebb bbbb b beeeeeeb bbebebebb eebeee bbebbbbbbeeeeb bbbebbbbbebbeeeb ebbee bbbbeeb e beebbbbbee eb ebbbbebbeebeebbeebbebbbebbb bbbebebeb bebebbeebbbbbbbbbbbb bebeeebbbbb ebbbbebbeebbbbbe beebeebb bbbeebeebbbbbeb eebbebeb eebbeeebbbebbbebbbbbbbbbbeeeebeb bebbe b bbbebbbebeebbebb ebeeebbbbb beb bbbbebebebbebbbbbbbebbbbebb bbbbbbebeb eeb ee ebbb bbbebbbbbbbbbebeebbbebbbeebeeeb eebbebbbbbbbbbebbee bbbbbbbbebeebeeebbeebeeebbebbebbbeeebeeebeeb eRel_acc 1220113156024611011262025036012023101531231204616567095664102111133012101604633367377115341025066764575221135113422011511021114014331003242451120128883758167767676103500440013014013021111210101101103205011141131112112011221220211100301321121002324112002010211111101121156562203215240103141200100100221100301221410111220200120213212600111342321023321111101041136166200111012300111130131011410356244121414001336200213142500042125253131002125521231115625613001101802670565112213010102111013032033630303154203334034213107402110221163144202313266536413573439916511350722000130140300112122414108110331117242040272302451202302152211214212235140164461002222215231125374625210114112101163433411301431164617123211231055261600411021231203587265210000560015571243011715344205124112020511774042200402145762030211331212504890775027813213217091001121255165853700211024250410112351441154272002215212511332021303543161204314111023030074716020013116341120013331030100511142732120210321032012331261625043431302113226600630887506114186761410010404100247165011515805443622303021440011200146604742055553301014226142011114202122511210207313321211123220103 ........bb..bb......b...b..b.........b.......bb.bbbb.bbbbb...............b.bb...bb.bb..b.e...e.bbbbbbbb.....e...e.....b.......b..b.......b.bb......bbb.bbb.bbbbbbbb...b..bb......b.......................b....b.......................................e......................bbbb......e.b.....b......................e....................b......e.................b...b.bb........................b...bb.bb...b.b.....b.......b.b...b...b.e.........ee.......bb.bb........b..bb.bbb........................b......be.....b..e.....bb.........b..bb.......bbb.bb..bb.b.bb.bb...b.b.........b..........b.b..b........b.e..e..b....eb........b......e.....b.b..bbbb.........e.....b.bbb.b.....b.......b.b..b.....b...bbb.b..........bb.b.b..b...........bbb.bb......bb...bbb..b....b.e.be..b..b......b..bbb.b....e...bbbb.............b.bbb.bbb..bb.......b.b........bb.bbbb.b.......b.b.b......b.bb..bb.b......b...b...........bb..b...b..b..........bbb.b........b.b................b...b.b.....................b.b.b.b.b..........bb..b..bbbb.b..b.bbbb.b.....b.e....bb.bb...b.bb.bbb.b........be........ebb.bbb..bbbb......b..b.b......b......e.......b..................

GLOBE prediction of globularity

--- 
--- GLOBE: prediction of protein globularity
--- 
--- nexp =   532    (number of predicted exposed residues)
--- nfit =   379    (number of expected exposed residues
--- diff =   153.00 (difference nexp-nfit)
--- =====> your protein appears as compact, as a globular domain
--- 
--- 
--- GLOBE: further explanations preliminaryily in:
---        http://www.columbia.edu/~rost/Papers/98globe.html
--- 
--- END of GLOBE