Predictions
for request Van_3111
YourSeq : MPRAPRCRAVRSLLRSHYREVLPLATFVRRLGPQGWRLVQRGDPAAFRALVAQCLVCVPWDARPPPAAPSFRQVSCLKELVARVLQRLCERGAKNVLAFGFALLDGARGGPPEAFTTSVRSYLPNTVTDALRGSGAWGLLLRRVGDDVLVHLLARCALFVLVAPSCAYQVCGPPLYQLGAATQARPPPHASGPRRRLGCERAWNHSVREAGVPLGLPAPGARRRGGSASRSLPLPKRPRRGAAPEPERTPVGQGSWAHPGRTRGPSDRGFCVVSPARPAEEATSLEGALSGTRHSHPSVGRQHHAGPPSTSRPPRPWDTPCPPVYAETKHFLYSSGDKEQLRPSFLLSSLRPSLTGARRLVETIFLGSRPWMPGTPRRLPRLPQRYWQMRPLFLELLGNHAQCPYGVLLKTHCPLRAAVTPAAGVCAREKPQGSVAAPEEEDTDPRRLVQLLRQHSSPWQVYGFVRACLRRLVPPGLWGSRHNERRFLRNTKKFISLGKHAKLSLQELTWKMSVRDCAWLRRSPGVGCVPAAEHRLREEILAKFLHWLMSVYVVELLRSFFYVTETTFQKNRLFFYRKSVWSKLQSIGIRQHLKRVQLRELSEAEVRQHREARPALLTSRLRFIPKPDGLRPIVNMDYVVGARTFRREKRAERLTSRVKALFSVLNYERARRPGLLGASVLGLDDIHRAWRTFVLRVRAQDPPPELYFVKVDVTGAYDTIPQDRLTEVIASIIKPQNTYCVRRYAVVQKAAHGHVRKAFKSHVSTLTDLQPYMRQFVAHL : YourSeq
AAD54777 : ...........................................................................................................................................................................................................................................................................................................................................................................INTGSSFR...PVLKLY.KEEVIWLGLDAYIQVLKKKN.SRYRMLLI...YLKSALSKHS....................LSQQLSSELRYATDR.....SNSSSLWKLNY.................................................................................................................................................................................................................................................................................................................. : AAD54777
AAD24465 : MTRAPRCPAVRSLLRSRYREVWPLATFVRRLGPEGRRLVQPGDPKIYRTLVAQCLVCMHWGSQPPPADLSFHQVSSLKELVARVVQRLCERNERNVLAFGFELLNEARGGPPMAFTSSVRSYLPNTVIETLRVSGAWMLLLSRVGDDLLVYLLAHCALYLLVPPSCAYQVCGSPLYQICATTDIWPSVSASRPTRPVGLQQIKSSSRQEAPKPLALPSRGTKRHLSLTSTSVPSAKKARCYPVPRVEEGPHRQVLPTPSGKSWVPSP....ARSPEVPAEKDLSSKGKVSDLSLSG.SVCCKHKPSSTSLLSPPRQNAFQLRP.FIETRHFLYSRGDQERLNPSFLLSNLQPNLTGARRLVEIIFLGSRPRTSGPLCRTHRLSRRYWQMRPLFQQLLVNHAECQYVRLLRSHCRFRTANQQVT...............DALNTSPPHLMDLLRLHSSPWQVYGFLRACLCKVVSASLWGTRHNERRFFKNLKKFISLGKYGKLSLQELMWKMKVEDCHWLRSSP................................................................................................................................................................................................................................................................ : AAD24465
TERT_MOUSE : .........................................................................................................................................................................................................................................................................................................................................................................................SFP.PEAAHWLCYQAFLLKLAAHS.VIYKCLLG...PLRTAQKLLC..................RKLPEATMTILKAAADP.....ALSTDFQTILD.................................................................................................................................................................................................................................................................................................................. : TERT_MOUSE
TERT_HUMAN : .....................................................................................................................................................................................................................................................................................................................................................................................GAAGPLP.SEAVQWLCHQAFLLKLTRHR.VTYVPLLG...SLRTAQTQLS..................RKLPGTTLTALEAAANP.....ALPSDFKTILD.................................................................................................................................................................................................................................................................................................................. : TERT_HUMAN
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261-------271-------281-------291-------301-------311-------321-------331-------341-------351-------361-------371-------381-------391-------401-------411-------421-------431-------441-------451-------461-------471-------481-------491-------501-------511-------521-------531-------541-------551-------561-------571-------581-------591-------601-------611-------621-------631-------641-------651-------661-------671-------681-------691-------701-------711-------721-------731-------741-------751-------761-------771------- :
OrigSeq : MPRAPRCRAVRSLLRSHYREVLPLATFVRRLGPQGWRLVQRGDPAAFRALVAQCLVCVPWDARPPPAAPSFRQVSCLKELVARVLQRLCERGAKNVLAFGFALLDGARGGPPEAFTTSVRSYLPNTVTDALRGSGAWGLLLRRVGDDVLVHLLARCALFVLVAPSCAYQVCGPPLYQLGAATQARPPPHASGPRRRLGCERAWNHSVREAGVPLGLPAPGARRRGGSASRSLPLPKRPRRGAAPEPERTPVGQGSWAHPGRTRGPSDRGFCVVSPARPAEEATSLEGALSGTRHSHPSVGRQHHAGPPSTSRPPRPWDTPCPPVYAETKHFLYSSGDKEQLRPSFLLSSLRPSLTGARRLVETIFLGSRPWMPGTPRRLPRLPQRYWQMRPLFLELLGNHAQCPYGVLLKTHCPLRAAVTPAAGVCAREKPQGSVAAPEEEDTDPRRLVQLLRQHSSPWQVYGFVRACLRRLVPPGLWGSRHNERRFLRNTKKFISLGKHAKLSLQELTWKMSVRDCAWLRRSPGVGCVPAAEHRLREEILAKFLHWLMSVYVVELLRSFFYVTETTFQKNRLFFYRKSVWSKLQSIGIRQHLKRVQLRELSEAEVRQHREARPALLTSRLRFIPKPDGLRPIVNMDYVVGARTFRREKRAERLTSRVKALFSVLNYERARRPGLLGASVLGLDDIHRAWRTFVLRVRAQDPPPELYFVKVDVTGAYDTIPQDRLTEVIASIIKPQNTYCVRRYAVVQKAAHGHVRKAFKSHVSTLTDLQPYMRQFVAHL : OrigSeq
jalign : -------HHHHHH------EHHHHHHHHHH------EEE-----HHHHHHHHHHHEE----------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH---------EE-EEEE-----EEEEE-----HHHHHHH----HHHHHHHHHHHHHHH------E-------HH----------------------------------------------------------------------------------------------------------------------------------------------------HH--EE-----------------------HHHHEEEEEEE---------------HHHHHHHHHHHHHHHHHH----EEEEEE------HHHHHHH-----------------------HHHHHHHHH------H------HHHEE-----------HHHHHH---HEEHH----HHHHHHHHHHHH--HHH-------------HHHHHHHHHHHHHHHHHH--HEEEEE---EEEEEEHHHHHHEEEE----------HHHHHHHHHHHHHH--HHHHHHHHH--HHHHH--------------EE----------HHHHHHHHH-HHHHHHHHH---HH-----------------HHHHHHHEEEEE---------EEEEEE-------------EEEEEEEE-----EE---EEHHHHH------------------------------ : jalign
jfreq : ------HHHHHHHHH--HHEE----EEEEE------EEE-----HHHHHHHH-EEEEE--------------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---------E-EEEEE-----EEEEEE----EEEEEE----HHHHHHHHHHHHHHE-------E-------E----------------------EEE-------------------------------------------------------------------EEE----------------------------EE---------------------EEEEE-EEEE-------------E-----------EEEEEEEE------------------------HHHHHHH-------EEEEE--------------------------------------HHHHHHH-----HHHHHHHHHHHH-----------HHHHHHHHH-HHEE---HHHHHHHHHHHH------HEEE--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-EEEEEE------EEEEEEH-HHHHHHHHHHHHHHHHHHHHHHHH-----------------EEE--------EEEE------HHHH-HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH------EEEEEE----------HHHHHHHHHHH------EEHHHHHHHH-------EE-EEEEEEEE----HHHHHHHHH- : jfreq
jhmm : --------HHHHHH------E----HHHH-------EEE-----HHHHHHH--EEEE---------------HHHHHHHHHHHHHHHHHH-----EHHHHHHHH---------------------HHHHHHHH---HHHHHHH---HHHHHHHHH--EEEE--------------------------------------H-H-------------------------------------------------------------------EEE----------------------------------------------------EE---EEEE-----------EE------------EEEEEEEE-----------------HHHHHHHHHHHHHHHH------EE--------HHHHH-------------------------HHHHHHHHHH----EEE-E--HHHHHH-----------HHHHHH----EEE------HHHHHHHH--------E-------------HHHHHHHHHHHHHHHHHHHHHHHHHH--EEEE-------EEEEEE----HH-----HHHHHHHEE-----HH-------------H--EEE---------E----EEE------------HHHHHHHHHHHE---------------------HHHHHH-EEEEEE-------EEEEEEE-----------HHHHHHHHHE-----EEEEEEEEEE-------HHHH----------HHHHHHHH--- : jhmm
jnet : ------HHHHHHHHH--------HHHHHHH------EEE----HHHHHHHHHHHHEEE--------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH------------EEEE-----HHHHHH----HHHHHHH---HHHHHHHHHHHHEEE-------E-----------------------------HHHH-------------------------------------------------------------------EEEE----------------------------E---------------------EEEE--EEEE------------------------EEEEEEEEE-----------------HHHHHHHHHHHHHHH--------HHHH-----------------------------------HHHHHHHHH-----HHHHHHHHHHHH----------HHHHHHHHHHHHHHH----HHHHHHHHHHH------EEEE-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-EEEEEEE-----EEEEEEE--HHHHHHHHHHHHHHHHHHHHHHHH----------------EEEE-------EEEEE------HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH-------EEEEEEE---------HHHHHHHHHHH------EEEEEEEEEEE-----HHHHHHHHHHH----HHHHHHHHHH- : jnet
jpssm : ------HHHHHHHHHHH--HH--HHHHHHHH-----E------HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHH----------HHHHHH-----HHHHHHHH--HHHHHHHH---HHHHHHHHH--EEEE-------E-----------------------------HHHH-------------------------------------------------------------------EEEE--------------------------------------------------HEE---EEE-----------HHHHH--------HHHHHHEEE-----------------HHHHHHHHHHHHHHHHH-----HHHHHH------HHHHHH-----------------------HHHHHHHHH-----HHHHHHHHHHHH----------HHHHHHHHHHHHHHH---HHHHHHHHHHH-------EEEE-------HH--HHHHHHHHHHHHHHHHHHH--HHH--EEEEEEE------EEEEEE-----EEEE-HHHHHHHHHHHHHHHHH-----HHH-------EEEEE------EEEEEE-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH-------EEEEEEE---------HHHHHHHHHHH------EEE-EEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHH--- : jpssm
Jpred : ------HHHHHHHHH--------HHHHHHH------EEE-----HHHHHHHHHHHEE---------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH------------EEEE-----HHHHHH----HHHHHHH---HHHHHHHHHHEEEEE-------E------------------------------HHH-------------------------------------------------------------------EEE----------------------------------------------------EE---EEEE-------------------------EEEEEEEE-----------------HHHHHHHHHHHHHHH-------EE--------------------------------------HHHHHHHHH-----HHHHHHHHHHHH-----------HHHHHHHHH-HHHH----HHHHHHHHHHH------EEEE----------HHHHHHHHHHHHHHHHHHHHHHHHHHH-EEEEEE------EEEEEE---------HHHHHHHHHHHHHHHHHH----------------EEE--------EEEE--------HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHH-------EEEEEEE---------HHHHHHHHHHH------EEE-EEEEEE-------HHHH----------HHHHHHHH--- : Jpred
MCoil : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : MCoil
MCoilDI : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : MCoilDI
MCoilTRI : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : MCoilTRI
Lupas 21 : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 21
Lupas 14 : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 14
Lupas 28 : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 28
Jnet_25 : B--B--B-BBBBBBB--BBBBBBBBBBBBBBB--BB-BB---BB-BBBBBBBBBBBBBBB---BB-----B-BB-BB--BBB-BB-BBB-----BBBBBBB-BB-----BBB-BBB-BBB-BB--BBB-BB-B-BBBBBBB-BBB-BBBBBBBBBBBBBBBBB-BBBBBBB-BBBBBBBBB--B------------BBB--B-------B---B-B-B--B----------B----------B----------B--B------B----BBBBBBB---B---B---B-B--B----B-BB--B---------B-B---B-B-BBBBBB-BBBB-------B-B-BBB--BB--B-BB-BBBBBBBBBBBB-B--B---B--B--BBBBBB-BBB-BB-----B-BBBBB--BB-B--B----B--B------------------B--BB-BB--B----BBBBBBBBBBB-BBB-BBBB-B-B--BBB--B--BB-BB-BB-BBBB-BB--B-B--B-BB-------BB----B-B---BBBBBBBBBBBBBBBBBBBBBBBBB-------BBBBBB--BB--BB-B-BB-BB--BBB--B--------------BB-B-BBBBB---BB-BBBBBBBBBBB--B--------B---B-BBB-BB-B--------BBBBBB-B--BB--B--BBB-B--------BBBB-B-B--BB--B----BB-BB--BB----BBBB-BBBBBB-B----B---B---BB-BB-BB-BB--BBBBB : Jnet_25
Jnet_5 : ---------B---B------B--BB-BB--B---B-----------B--BBB-BBBBB---------------------BB--BB--B-------BBBBB------------------B-------B---B-----B-BBB--B---BBBBBB--BBBBBBB-------B----B--B-------------------B---B-------------------------------------------------------------------BBB---------------------------------------------------B-B-B---B-------------BB---------B--BB-BB----------------------------B--------------BB----------------B-------------------------B--------B---B---B--B--------------B-------B------------B---B----B--B---------------B---BBB-BB-BBB---B--BB--BBBB---------B-BB-------B----B---B---------------------------B-BB-------B-B-----------------------B--B------------------------B---B---BB-B---------B-B-B-B-----------B--BB----------BB-----B-------B---B---------B---B--B---B : Jnet_5
Jnet_0 : ---------------------------B------B--------------------B---------------------------------------------------------------------------------------------B--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------B-----------------------------------B-----------------------------------------------------------------------B---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------B----------------------------------------------------------------------- : Jnet_0
Jnet Rel : 998997399999987052111435688764589874064789839999999755313127998999999863323278999999999983486179999887651789999731210001268751667662464367888723908999998744314781888621337997530256677689988899876314143214554568876677764310123421112456656677778777778856556689999899998724762466665332342222246567898744117899999988898888766524643263325789866545142012034455664112570105467778999988865512455545559999872456560001220478652100122621255788888899999998738899986267850688788998867157666654226899999767876502314768999874356555135430689761023334579899999999999988787640223477716787279997708023422367345677699999875414444234267887325882289984148751223451145578999998999999999999997148976552347942899999999998861799996589998504666677758999999984699985565211345403214124655444311155237999999737 : Jnet Rel
Notes
Key: consv - Conservation number (+)
= 0; (-) = 10 phd - PHD prediction dsc - DSC prediction pred - PREDATOR
prediction nnssp - NNSSP prediciton zpred - Zpred prediction mul - Mulpred
prediction jnet - Jnet prediction jalign - Jnet alignment prediction jhmm
- Jnet hmm profile prediction jpssm - Jnet PSIBLAST pssm profile prediction
jfreq - Jnet PSIBLAST frequency profile prediction Jpred - Consensus prediction
over all methods PHDacc - Solvent Accessibility PHD Rel - PHD Reliability
PRED Rel - Predator Reliability NNSSP Rel - NNSSP Reliability PHDHtm -
PHD transmembrane prediction MCoil - MultiCoil prediction (+ Dimer and
trimer predictions) Lupas - Lupas Coil prediction (21,14,and 28 window
sizes) Note on coiled coil predictions - = < 50% probability c = >50%
<90% probability C = >90% probability