Clicking on the species
column entires gives formal classification of organism.
Clicking on the sequence gives its background metadata.
There were two sources for Rhodopsin Sequences:
Entrez which enables directed search on the term Rhodopsin and others
Swiss
Model Protein Data Base, which required manually requesting "species"
Rhodopsin in the form field.
Table 1: Rhodopsin analogs by species
|
Species
|
Sequence
|
|
001
hlidphwfqf ppmnplwhgl lgftigvlgf ismvgngmvi yifsatknlk tpsnllvvnl
061 afsdflmmft mspamvvncy netwvfgpfa celygcagsl fgcisiwtmt miafdrynvi 121 vkgiaaepmt kkgallrilf vwaaslawtl aplfgwnryv pegnmtacgt dyltkdwfsr 181 syilvygffv yfaplfliiy syyfivkava aheksmreqa kkmnvaslrs sesantnaec 241 klakvalmti slwflawtpy liinfmgife smpispltti wgslfakana vynpivygis 301 hpryraalyk kfpslscqaa sdevdsvasn vtavsnekpa a |
|
|
001 maanysddig pmaypmklvs seivehmmgw nipeehqamv hahwrsfpav skyyhfilal
061 iytmlmvtsl igngiviwif stskslrsas nmfvinlavf dlmmmiempl liansfyqhp 121 igfqlgcdiy avlgsisgig gaitnaviaf dryktiscpl dgrinkvqas llivftwfws 181 lpftilpalk vwgrfvpegf lttcsfdyft ddqdtkvfva cifvwsyaip malicyfysq 241 lfgavrlhek mlqeqakkmn vkslasnked asksveiria kvaftiffmf vcgwtpyaiv 301 tmtgaygdrs llspvatmip avcckivsci dpwvyainhp ryraelqkrl pwlgvreqdp 361 dsvstsnsvt ttqshtpnae t |
|
|
001
miapaamdnh tennynygay fapyrsdepv emlgagltga dlaaipehwl aypappasah
061 tmlalvyvff taaaligngl vififsasks lrtpsnllvv qlaildflmm lkapifiyns 121 ikrgfaagvi gcqifafmgs vsgtaagltn aciaydrhst itrpldgrls rgkvllmmvc 181 vwvytapwai lpqlqiwgry vpegfltsct fdyltttfdn klfvasmfvc vyvfpmlaim 241 yfysgivkqv faheaalreq akkmnvdslr snqnasaesa eiriakaalt vcflyvaswt 301 pygvmsliga fgdqnlltpg vtmipalack gvacidpwvy aishpkyrqe lqkrmpwlqi 361 depddnvsnt tnntanssap a |
|
|
001
maldsldpaa tfghawagkm eaygsnqtvi dqvlpemihl idphwyqfpp mnplwhgllg
061 fviavlgfis lsgngmviyi ftttktlktp snllvlnlav sdflmmtcma pplvvnsyhe 121 twvfgplaca lyaaagslfg tisiwtmtmi afdrynvivk giaakpmtnn gallrilaiw 181 vsslawtvap mfgwnryvpe gnmtacgtdy lnkdwfsrsy ivayaifcyf tplaliiysy 241 ffiiqavaah eramreqakk mnvaslrsse aantsaeckl akvalmtisl wfmawtpylv 301 inftgifeta tisplgtiwg svfakanavy npivygishp kyraalyqrf pslacqpaad 361 dntsqasgkt tvceekpsa |
|
|
001
maldylntga akmgtwngqm sayganqtvv dkvlpemlhl idphwyqfpp mnplwygllg
061 ftiaclaits itgnamviyi ftttknlktp snllvvnlav sdflmmacma ppliinsyne 121 twvfgplfca iyacggslyg tvsiwtmtai afdrynvivk giaakpmsin gallrilaiw 181 lsslawtvap ifgwnryvpe gnmtvcgtdy lskdmlsrsy iiayavfcyf lplgliiysy 241 wfiiqavaah ekamreqakk mnvaslrssd aantsaeckl akvalmtisl wfmawtpylv 301 infagvfeta pispvstiwg svfakanavy npivygishp kyraalyqrf pslacqpspd 361 esgsvasgnt avceekppa |
|
|
001
mngtegpnfy vpmsnktgvv rnpfeypqyy ladpwkysal aaymfflilv gfpinfltlf
061 vtiqhkklrt plnyilldla vadlcmvfgg ffvtmyssmn gyfvlgptgc niegffatlg 121 gqvalwalvv laieryvvvc kpmsnfrfge nhaimgvift wimalscavp plfgwsryip 181 egmqsscgvd yytlkpevnn esfviymfvv hftiplivif fcygrlvctv kdaaaqqqes 241 attqkaekev trmvivmvis flvcwvpyas vaayiffnqg sefgpvfmta psffaksasf 301 ynpviyilln kqfrncmitt lccgknpfgd edatsaagss kteassvsss svspa |
|
|
001
mngtegpafy vpmsnatgvv rspyeypqyy lvapwaygll aaymffliit gfpvnfltly
061 vtiehkklrt plnyillnla iadlfmvfgg ftttmytslh gyfvfgrlgc nlegffatlg 121 gemglwslvv laierwmvvc kpvsnfrfge nhaimgvaft wvmacscavp plvgwsryip 181 egmqcscgvd yytrtpgvnn esfviymfiv hffiplivif fcygrlvctv keaaaqqqes 241 ettqraerev trmviimvia flicwlpyag vawyifthqg sefgpvfmtl paffaktsav 301 ynpciyicmn kqfrhcmitt lccgknpfee eegasttask teassvssss vspa |
|
| 001 mngtegpafy
vpmsnatgvv rspyeypqyy lvapwaygfv aaymffliit gfpvnfltly 061 vtiehkklrt plnyillnla iadlfmvfgg ftttmytslh gyfvfgrlgc nlegffatlg 121 gemglkslvv laierwmvvc kpvsnfrfge nhaimgvaft wvmacscavp plvgwsryip 181 egmqcscgvd yytrtpgvnn esfviymfiv hffiplivif fcygrlvctv keaarqqqes 241 ettqraerev trmviimvia flicwlpyag vawyifthqg sefgpvfmtl paffaktsav 301 ynpciyicmn kqfrhcmitt lccgknpfee eegasttask teassvssss vspa |
|
|
001
mngtegpnfy vpfsnatgvv rspfeypqyy laepwqfsml aaymfllivl gfpinfltly
061 vtvqhkklrt plnyillnla vadlfmvlgg ftstlytslh gyfvfgptgc nlegffatlg 121 geialwslvv laieryvvvc kpmsnfrfge nhaimgvaft wvmalacaap plagwsryip 181 eglqcscgid yytlkpevnn esfviymfvv hftipmiiif fcygqlvftv keaaaqqqes 241 attqkaekev trmviimvia flicwvpyas vafyifthqg snfgpifmti paffaksaai 301 ynpviyimmn kqfrncmltt iccgknplgd deasatvskt etsqvapa |
|
|
001
kkkr
|
|
| 001 wslvvlaiew yvvvckpmsn fr | |
| 001 netwwynpym
dihshwkqfd qvpaavyysl gifiaicgii gcagngiviy lftktkslqt 061 panmfiinla fsdftfslvn gfpmmtiscf lkhwvfgqaa ckvygliggi fgltsimtmt 121 misidrynvi rrpmsaskkm shrkafimiv fvwiwstiwa igpifgwgay qlegvlcncs 181 fdyitrdast rsnivcmyif afmfpivvif fcyfnivmsv snhekemaam akrlnakelr 241 kaqagasaem klakisiviv tqsllswspy aivallaqfg piewvtpyaa qlpvmfakas 301 aihnpmiysv shpkfreaia snfpwiltcc qydekeiedd kdaeaeipaa eqsggesvda 361 aqmkemmamm qkmqaqqqqq payppqgypp qgypppppqg yppqgyppqg yppqgypppp 421 qgpppqgppp qaappqgvd |
|
|
001
mmsiasgpsh aaytwtaqgg gfgnqtvvdk vppemlhlvd ahwyqfppmn plwhailgfv
061 igilgmisvi gngmviyift ttkslrtpsn llvinlaisd flmmlsmspa mvincyyetw 121 vlgplvcely gltgslfgcg siwtmtmiaf drynvivkgl sakpmtinga llrilgiwff 181 slgwtiapmf gwnryvpegn mtacgtdylt kdllsrsyil vysffcyflp lfliiysyff 241 iiqavaahek nmreqakkmn vaslrsaenq stsaecklak valmtislwf mawtpylvin 301 yagifetvki nplftiwgsl fakanavynp ivygishpky raalfqrfps lacssgpaga 361 dtlsttttvt egtekpaa |
|
| 001 mngtegpnfy
vpmsnktgvv rspfdypqyy laepwqysal aaymfllill glpinfmtlf 061 vtiqhkklrt plnyillnlv fanhfmvlcg ftvtmytsmh gyfifgqtgc yiegffatlg 121 gevalwslvv laverymvvc kpmanfrfge nhaimgvaft wimalscaap plfgwsryip 181 egmqcscgvd yytlkpevnn esfviymfiv hftiplivif fcygrllctv keaaaqqqes 241 attqkaekev trmvvimvvf flicwvpyay vafyifthqg snfgpvfmtv paffakssai 301 ynpviyivln kqfrnclitt lccgknpfgd edgssaatsk teassvsssq vspa |
|
|
001
mngtegpnfy vpfsnatgvv rspfeypqyy laepwqfsml aaymfllivl gfpinfltly
061 vtvqhkklrt plnyillnla vadlfmvlgg ftstlytslh gyfvfgptgc nlegffatlg 121 geialwslvv laieryvvvc kpmsnfrfge nhaimgvaft wvmalacaap plagwsryip 181 eglqcscgid yytlkpevnn esfviymfvv hftipmiiif fcygqlvftv keaaaqqqes 241 attqkaekev trmviimvia flicwvpyas vafyifthqg snfgpifmti paffaksaai 301 ynpviyimmn kqfrncmltt iccgknplgd deasatvskt etsqvapa |
|
|
001
mngtegpnfy vpfsnktgvv rspfeapqyy laepwqfsml aaymflliml gfpinfltly
061 vtvqhkklrt plnyillnla vadlfmvfgg ftttlytslh gyfvfgptgc nlegffatlg 121 geialwslvv laieryvvvc kpmsnfrfge nhaimgvaft wvmalacaap plvgwsryip 181 egmqcscgid yytpheetnn esfviymfvv hfiiplivif fcygqlvftv keaaaqqqes 241 attqkaekev trmviimvia flicwlpyag vafyifthqg sdfgpifmti paffaktsav 301 ynpviyimmn kqfrncmvtt lccgknplgd deasttvskt etsqvapa |
Table 2: Swiss Model Rhodopsin Query Results
|
|